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clusterStab specifications


Unique identifier OMICS_20499
Name clusterStab
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.52.0
Stability Stable
methods, genefilter, R(>=1.9.0), fibroEset, Biobase(>=1.4.22)
Maintained Yes




No version available



  • person_outline James MacDonald

clusterStab citations


Transcriptome Analysis of a Bloom Forming Cyanobacterium Microcystis aeruginosa during Ma LMM01 Phage Infection

Front Microbiol
PMCID: 5780444
PMID: 29403457
DOI: 10.3389/fmicb.2018.00002

[…] re was performed with varying numbers of clusters (k = 2–7), and the distribution of the Jaccard coefficients obtained was displayed as a histogram. The benhur function in the R/Bioconductor package “clusterStab” was used to carry out the clustering and calculation. The dendrogram of Ma-LMM01 expression clusters was plotted using the dendrogram function (hclust; R package stats). The heat map anal […]


An Eight Gene Blood Expression Profile Predicts the Response to Infliximab in Rheumatoid Arthritis

PLoS One
PMCID: 2762038
PMID: 19847310
DOI: 10.1371/journal.pone.0007556

[…] y are generally used without any assessment of the statistical robustness of the identified clusters . In the present study we use the resampling-based method implemented in the Bioconductor package “clusterStab” to determine both the optimal number of clusters and the statistical significance of the final clustering . The differential gene expression between the significant clusters was performed […]


Early iron deficiency induced transcriptional changes in Arabidopsis roots as revealed by microarray analyses

BMC Genomics
PMCID: 2676303
PMID: 19348669
DOI: 10.1186/1471-2164-10-147
call_split See protocol

[…] ini and Hochberg []. Cluster analysis was performed using the k-means methods with the algorithm of Hartigan and Wong []. The cluster stability was determined using the "benhur" function found in the clusterStab program of Bioconductor .All microarray data from this study have been deposited in NCBI Gene Expression Omnibus (accession number GSE15189). […]

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