ClustVis protocols

View ClustVis computational protocol

ClustVis statistics

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Associated diseases

ClustVis specifications


Unique identifier OMICS_08539
Name ClustVis
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Jaak Vilo <>

Publication for ClustVis

ClustVis in pipeline

PMCID: 5927432
PMID: 29709017
DOI: 10.1371/journal.pone.0193922

[…] heat map of the differentially expressed and upregulated transcripts following the fol inoculation have been shown (). the heat map was based on clustering of multivariate data values using clustvis the est transcripts that were found to be differentially expressed under fol challenged conditions were wrky4 (est accession id: bi928665), wrky33 (bm409514), wrky37 (es892922), wrky40 […]

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ClustVis in publications

PMCID: 5927432
PMID: 29709017
DOI: 10.1371/journal.pone.0193922

[…] wrky transcripts in both fol inoculated and control samples. the tabulated gene expression datasets generated for fol inoculated and fol un-inoculated were further analyzed and validated through the clustvis []. based on the principal component analysis the heatmap plot for differentially expressed transcripts was generated., genome-wide in silico microarray data […]

PMCID: 5915448
PMID: 29691386
DOI: 10.1038/s41424-018-0017-4

[…] the same eukaryotic genes, thus making them independent of the biopsy size., in order to identify overlap or cluster formation we performed principal component analysis (pca) plots and heatmaps by clustvis web tool. clustvis is written using the shiny web application framework (r package version for r statistics software, using several r packages internally,. each pca was calculated […]

PMCID: 5906561
PMID: 29670257
DOI: 10.1038/s41598-018-24421-z

[…] all results were normalized against actb as the endogenous control gene. qrt-pcr was performed using quantstudio 6 flex real-time pcr system (applied biosystems)., for generating the heat maps, clustvis online software was used. the statistical correlation analysis function was performed using ncss software. pairwise matrix of correlation values was generated using heatmapper software. […]

PMCID: 5908196
PMID: 29630596
DOI: 10.1371/journal.pgen.1007322

[…] given in supporting information ., principal component analysis and two-way cluster analysis of the hypocreales pcwdcazomes (supporting information ) were made with the use of []. cluster analysis was made with euclidian distance and complete linkage method., to analyse whether the genomic location of the identified pcwdcazomes would be syntenic among the nine […]

PMCID: 5898276
PMID: 29681917
DOI: 10.3389/fpls.2018.00458

[…] 0.05 and a logfc (from edger method) higher than 1 or lower than -1 were considered as degs. euler diagram was created in the website. clustering and heatmap were performed by the clustvis web tool. gene enrichment analyses were performed with the fischer’s exact test using topgo package in r and the go file retrieved from the pgsb/mips plantsdb website., for arabidopsis […]

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ClustVis institution(s)
Institute of Computer Science, University of Tartu, Tartu, Estonia
ClustVis funding source(s)
Innovative Medicines Initiative Joint Undertaking [115188], European Union's Seventh Framework Programme (FP7/2007-2013) and European Federation of Pharmaceutical Industries and Associations (EFPIA) through project PREDECT; European Regional Development Fund through the Estonian Center of Excellence in Computer Science (EXCS); Estonian Research Council [IUT34-4]

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