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CM Classifier specifications


Unique identifier OMICS_12136
Name CM Classifier
Interface Web user interface
Restrictions to use None
Input data Sequence
Input format FASTA
Computer skills Basic
Stability No
Maintained No


  • Primates
    • Homo sapiens
  • Viruses
    • Human immunodeficiency virus 1
    • Human immunodeficiency virus 2


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Publication for CM Classifier

CM Classifier citations


Performance comparison of next generation sequencing platforms for determining HIV 1 coreceptor use

Sci Rep
PMCID: 5301480
PMID: 28186189
DOI: 10.1038/srep42215

[…] ubtypes (2 CRF01-AE, 1 CRF02-AG and 1 subtype C) and a correct prediction was observed for two samples (1 CRF01-AE and 1 subtype C). We also tested the capacity of two other genotypic algorithms, the CM classifier ( and geno2pheno 5.75% ( for predicting tropism. The sensitivity of the CM classifier for detecting the […]


A Representational Similarity Analysis of the Dynamics of Object Processing Using Single Trial EEG Classification

PLoS One
PMCID: 4546653
PMID: 26295970
DOI: 10.1371/journal.pone.0135697

[…] than counts—of classifications, and CM can be interpreted as an estimated conditional probability matrix []. We henceforth use the term “confusion matrix” to refer to this normalized confusion matrix CM. Classifier accuracy, defined as the percentage of classification attempts that correctly predicted the label of the observation, is thus computed as the mean of the diagonal of the (normalized) co […]


Using n Grams for Syndromic Surveillance in a Turkish Emergency Department Without English Translation: A Feasibility Study

PMCID: 3653813
PMID: 23700370
DOI: 10.4137/BII.S11334

[…] created by the Electronic Surveillance System for Early Notification of Community-based Epidemics (ESSENCE), a project of the United States Centers for Disease Control and Prevention.Once this ICD-10-CM classifier was defined, the new n-gram-based Turkish CC RESP classifier was created using the training set of the first 10 months of data. This was subsequently tested on the patient data from the […]


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CM Classifier institution(s)
The Key Laboratory of Bioinformatics, Ministry of Education, School of Life Sciences, Tsinghua University, China; Department of Biostatistics, Saw Swee Hock School of Public Health, National University of Singapore, Singapore
CM Classifier funding source(s)
This work was supported in part by grant 20143000221 and 20141301071 from the Natural Science Foundation of China, 20151860049 from the Ministry of Science and Technology of China, and 104519-010 from the International Development Research Center, Ottawa, Canada.

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