CM specifications


Unique identifier OMICS_29985
Name CM
Alternative name Cluster Matcher
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data The files output by the ClusterPicker and, as an option, corresponding annotation files.
Input format NEWICK
Output data A file for each matching pair of clusters (or each cluster if used in single data set mode) that is consistent with user specifications, as well as a log file detailing settings and summarizing results.
Output format FIGTREE
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 1.2.7
Stability Stable
Java Running Environment
Maintained Yes




No version available



  • person_outline Manon Ragonnet-Cronin
  • person_outline Emma Hodcroft

Publication for Cluster Matcher

CM institution(s)
University of Edinburgh, Edinburgh, UK; University College London, London, UK; MRC Clinical Trials Unit, London, UK; Public Health England, London, UK
CM funding source(s)
Supported by the Wellcome Trust (Grant number 092807) and the Biotechnology and Biological Science Research Council (Grant number BB/F017030/1).

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