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CMap specifications

Information


Unique identifier OMICS_00933
Name CMap
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Z. Fang <>

Publication for CMap

CMap in publications

 (2)
PMCID: 3173454
PMID: 21846342
DOI: 10.1186/1471-2164-12-413

[…] physical map positions. anchored contigs were sorted according to genetic position and pseudomolecules were constructed by adding an arbitrary gap of 0.25 mbp between anchored contigs. finally, a cmap file was constructed for 10 anchored linkage group maps (pseudo1-pseudo10) with the following four feature types: contig, gap, marker, and sts. genome size was estimated as the sum of anchored […]

PMCID: 3224129
PMID: 21592415
DOI: 10.1186/1471-2164-12-246

[…] sequences installed on the gbrowse system [] (online access available []). the browser also has search functions using sequence queries and mapped ests (figure , see also additional file ) on a cmap browser []. the blastn analysis using flcdnas gave 1,474 contigs greater than 500 bp with significant blastn scores (e < 1e-30). of these, 453 contigs showed homology to multiple flcdna clone […]


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CMap institution(s)
Department of Agronomy, University of Missouri, Columbia, MO, USA

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