CMfinder protocols

CMfinder specifications

Information


Unique identifier OMICS_03472
Name CMfinder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 0.2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Zizhen Yao <>

Information


Unique identifier OMICS_03472
Name CMfinder
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 0.2
Stability Stable
Maintained Yes

Maintainer


  • person_outline Zizhen Yao <>

Publication for CMfinder

CMfinder IN pipeline

2011
PMCID: 3152330
PMID: 21478170
DOI: 10.1093/nar/gkr168

[…] of mfes for 1000 permuted sequences with the same dinucleotide content for each termini (34). the regions that had a pā€‰<ā€‰0.001 where subsequently fed into the alignment and folding algorithm cmfinder (29). this alignment was manually refined using the ralee alignment editor (31). a covariance model was built for the resulting alignment (26) and then rnie was deployed for annotating […]

CMfinder institution(s)
Department of Computer Science and Engineering, University of Washington Seattle, USA

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