CMIF specifications

Information


Unique identifier OMICS_18863
Name CMIF
Alternative name Causal Model Inference Framework
Restrictions to use None
Input data A matrix of TF activities per sample as measured by VIPER, continuous intensity profiles for the copy number calls and phenotype data that can be either image features or features derived from gene expression data.
Output data A table of functional triplets with their corresponding model classification.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Leon Chlon <>

Publication for Causal Model Inference Framework

CMIF institution(s)
Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK
CMIF funding source(s)
Supported by the Cancer Research UK and Engineering and Physical Sciences Research Council Imaging Centre in Cambridge and Manchester grant (C197/A16465).

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