CMsearch protocols

CMsearch specifications


Unique identifier OMICS_13452
Name CMsearch
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Xin Gao <>

Publication for CMsearch

CMsearch IN pipeline

PMCID: 5522923
PMID: 28729256
DOI: 10.1128/genomeA.00496-17

[…] of 647×. the complete genome was analyzed by genemarks (3) for gene prediction, trnascan-se (4) for trna, rrnammer (5) for rrna, and srna were predicted by blast against the rfam database (6) and cmsearch (version 1.1rc4). the interspersed repetitive sequences and tandem repeats were analyzed by repeatmasker (7) and trf (8), respectively. as a result, the genome of zly1309f contains 1,208 […]

CMsearch institution(s)
King Abdullah University of Science and Technology, Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering, Division, Thuwal, Saudi Arabia; Beijing Key Laboratory of Big Data Management and Analysis Methods, School of Information, Renmin University of China, Beijing, China; Toyota Technological Institute at Chicago, Chicago, IL, USA; Department of Human Genetics, University of Chicago, Chicago, IL, USA
CMsearch funding source(s)
The research reported in this publication was supported by the King Abdullah University of Science and Technology (KAUST) Office of Sponsored Research (OSR) under Award No. URF/1/1976-04, National Natural Science Foundation of China, the Fundamental Research Funds for the Central Universities and the Research Funds of Renmin University of China (15XNLQ01), and IBM Global SUR Award Program.

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