CMStalker statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CMStalker

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CMStalker specifications


Unique identifier OMICS_23267
Name CMStalker
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Mauro Leoncini
  • person_outline Manuela Montangero
  • person_outline Marco Pellegrini

Publication for CMStalker

CMStalker citation


A New Algorithm for Identifying Cis Regulatory Modules Based on Hidden Markov Model

Biomed Res Int
PMCID: 5405574
PMID: 28497059
DOI: 10.1155/2017/6274513

[…] motifs in each aligned window. Some other methods use combinatorial approaches to search a combination of motif sites satisfying specific constraints in a window region of a given size. For example, CMStalker [] and CPModule [] use a constraint satisfaction formulation and a constraint programming for itemset mining approach, respectively. The advantages of these methods are that they are simple, […]

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CMStalker institution(s)
Department of Physics, Computer Science, and Mathematics, University of Modena and Reggio Emilia, Italy; IIT-CNR, Pisa, Italy; Department of Science and Methods for Engineering, University of Modena and Reggio Emilia, Italy
CMStalker funding source(s)
Partially supported by the Flagship project InterOmics (PB.P05) which is funded and supported by the Italian MIUR and CNR organizations, and by the joint IIT-IFC Laboratory for Integrative System Medicine (LISM).

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