CMView protocols

CMView specifications

Information


Unique identifier OMICS_07132
Name CMView
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Version 1.1
Stability Stable
Maintained Yes

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Publication for CMView

CMView IN pipelines

 (2)
2016
PMCID: 4797681
PMID: 27053964
DOI: 10.2174/1874091X01610010001

[…] simulations. at the moment puma has been chosen for md modeling [23, 24]. occasionally it is also required to use other programs (for example hyperchem) for preparing md structure., in contrast to cmview, the tamd program is designed mainly to analyze md trajectories. tamd provides an adjustable output of molecular animation (without running external programs such as pymol [61]) […]

2016
PMCID: 4839703
PMID: 27101008
DOI: 10.1371/journal.pone.0153868

[…] which is a frequently-used ligand in the study of the ligand–α-amylase interaction [29] was docked into amya and amyb. the contact maps of the amya and amyb isoforms were visualized using cmview-1.1.1 program. a casp7 prediction was used to compare the native structure amya with the truncated amyb one. a ca contact type, 8.0 å distance cutoff and a needleman-wunsch pairwise sequence […]

CMView institution(s)
Department of Simulations and Graphics, OvG University Magdeburg, Berlin, Germany

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