cn.FARMS statistics

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cn.FARMS specifications


Unique identifier OMICS_02060
Name cn.FARMS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.28.0
Stability Stable
methods, Biobase, snow, DNAcopy, lattice, R(>=3.0), preprocessCore, ff, DBI, affxparser, oligo, oligoClasses, pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6
Maintained Yes


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Publication for cn.FARMS

cn.FARMS in publication

PMCID: 3428662
PMID: 22691279
DOI: 10.1186/1755-8794-5-24

[…] for breakpoints through a hmm model. in this section, we compare cnvhac with two widely used raw cn estimation methods, crma_v2 (‘copy-number estimation using robust multichip analysis’ []) and cn.farms (‘factor analysis for robust microarray summarization’ []), to evaluate the accuracy of estimated raw cn n^mk. crma_v2 is an extension of crma [] for estimating raw cns for downstream […]

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cn.FARMS institution(s)
Institute of Bioinformatics, Johannes Kepler University Linz, Linz, Austria

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