Cn3D statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Molecule viewers chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Cn3D specifications

Information


Unique identifier OMICS_05052
Name Cn3D
Interface Web user interface
Restrictions to use None
Programming languages C++
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Cn3D

Maintainer


  • person_outline Stephen H. Bryant <>

Publication for Cn3D

Cn3D in publications

 (18)
PMCID: 5735805
PMID: 29258555
DOI: 10.1186/s12985-017-0907-1

[…] of the dpp4 binding domain in the s protein was predicted using the sequence-homology method that is based on sequences and structures released by the protein data bank (pdb) and visualized by cn3d v4.3 software []. the secondary structure elements are defined based on an espript (http://espript.ibcp.fr) algorithm [] and are labelled in a previous report on the mers-rbd structure []., two […]

PMCID: 5807474
PMID: 29164268
DOI: 10.1007/s00011-017-1118-3

[…] and developed as described above. for detection of weak bands, ecl prime reagent (ge healthcare, vienna, austria) was substituted for ecl reagent. structural views were created with the ncbi cn3d 4.3.1 software [] using dao structure 3hi7 []., using human dao cdna fragments expressed in vitro as antigens, we recently produced a series of mouse monoclonal antibodies that bind to human dao […]

PMCID: 5633628
PMID: 28791419
DOI: 10.1007/s00011-017-1086-7

[…] and developed as described above. for detection of weak bands, ecl prime reagent (ge healthcare, vienna, austria) was substituted for ecl reagent. structural views were created with the ncbi cn3d 4.3.1 software [] using hnmt structure 1jqd []., using human and porcine hnmt expressed in vitro as antigens, we recently produced a series of mouse monoclonal antibodies that bind to human hnmt […]

PMCID: 4909266
PMID: 27304881
DOI: 10.1371/journal.pone.0156838

[…] 2r1j_l, 3jxb_c] []. hhpred [] and raptorx [–] were used to predict tertiary structure and binding sites. these predicted structures were then superimposed using strap [] and compared using ncbi’s cn3d []., phamerator [] was used to analyze the differentiating features between jenst and sectim467. the palindrome command of emboss [] was used to verify the presence of inverted repeats […]

PMCID: 4547178
PMID: 26329268
DOI: 10.1186/1471-2105-16-S11-S7

[…] both representations, impeding the process required for the user to construct mental models of the problem at hand. only a few tools provide linked 3d structure and sequence visualisations (e.g., cn3d [], strap [], and ucsf chimera [,]), however they do not scale well for the visualisation of large numbers of sequences, as amino acid sequences are rendered using one-letter codes exclusively […]


To access a full list of publications, you will need to upgrade to our premium service.

Cn3D institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA

Cn3D reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Cn3D