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CNAnorm

A normalization method for copy number aberration in cancer samples. CNAnorm performs ratio, GC content correction and normalization of data obtained using very low coverage (one read every 100-10,000 bp) high throughput sequencing. It performs a “discrete” normalization looking for the ploidy of the genome. It also provides tumour content if at least two ploidy states can be found.

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CNAnorm forum

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CNAnorm classification

CNAnorm specifications

Software type:
Package/Module
Restrictions to use:
None
Biological technology:
Illumina
Programming languages:
Perl, R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Interface:
Command line interface
Input format:
BAM
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.12.0
Requirements:
methods

CNAnorm distribution

versioning

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No versioning.

CNAnorm support

Maintainer

  • Stefano Berri <>

Credits

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Publications

Institution(s)

Department of Statistics, University of Leeds, Leeds, UK

Link to literature

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