CNCI protocols

CNCI specifications


Unique identifier OMICS_09888
Alternative name Coding-Non-Coding Index
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes


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  • person_outline Yi Zhao <>

Publication for Coding-Non-Coding Index

CNCI IN pipeline

PMCID: 4808792
PMID: 26938562
DOI: 10.3390/genes7030011

[…] with known protein-coding genes and lncrnas in the public databases; (2) select transcripts that are longer than 200 nt; and (3) filter the putative lncrna transcripts by coding potential using cnci software [36], which can be categorized as noncoding (cnci is a powerful signature tool that profiles adjoining nucleotide triplets to effectively distinguish protein-coding and non-coding […]

CNCI institution(s)
Bioinformatics Research Group, Advanced Computing Research Laboratory, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China
CNCI funding source(s)
Training Program of the Major Research plan of the National Natural Science Foundation of China (91229120); International Science and Technology Cooperation Projects (2010DFA31840 and 2010DFB33720)

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