Cnidaria specifications

Information


Unique identifier OMICS_30402
Name Cnidaria
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++, Javascript, Python, Shell (Bash)
License MIT License
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

Download


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Versioning


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Documentation


Maintainer


  • person_outline Cnidaria Team

Additional information


https://github.com/sauloal/cnidaria/wiki

Publication for Cnidaria

Cnidaria citation

library_books

Analysis of Plant Pan Genomes and Transcriptomes with GET_HOMOLOGUES EST, a Clustering Solution for Sequences of the Same Species

2017
Front Plant Sci
PMCID: 5306281
PMID: 28261241
DOI: 10.3389/fpls.2017.00184

[…] an-genome at the base-pair level. However, when this kind of data is not available it is still possible to explore a pan-genome by clustering raw reads or assembled contigs. This would be the case of Cnidaria, which uses k-mer counting algorithms to efficiently compute genetic distances and classify samples (). GET_HOMOLOGUES-EST, described in this paper, aims at reconstructing a gene-based pan-ge […]

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