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|Alternative name||Cnidarian evolutionary genomics dataBase|
|Restrictions to use||None|
Publication for Cnidarian evolutionary genomics dataBase
An Atlas of annotations of Hydra vulgaris transcriptome
[…] icult task, and without the help of biologists friendly tools, it appears to be a problematic case. By searching the literature, we observed that only two web resources are available: Compagen  and Cnidbase . On the one hand, Compagen basically stores all the raw and processed sequences from sponges, cnidarians, tunicates and lower vertibrates to retrospect evolutionary relationship among them […]
Gene Expression in the Scleractinian Acropora microphthalma Exposed to High Solar Irradiance Reveals Elements of Photoprotection and Coral Bleaching
[…] ervices at EBI (http://www.ebi.ac.uk/Tools/MPsrch/index.html) for initial comparison of amino-acid sequences against all ESTs deposited in GenBank and coral EST libraries in the public domain (http://cnidbase.org/index.cgi); (ii) Annotation of these ESTs using tBLASTx search of the non-redundant nucleotide (nr/nt) database (http://blast.ncbi.nlm.nih.gov/Blast.cgi) and KEGG Orthology (KO) databases […]
Are Hox Genes Ancestrally Involved in Axial Patterning? Evidence from the Hydrozoan Clytia hemisphaerica (Cnidaria)
[…] Homeodomain sequences from Clytia were aligned with sequences from a wide range of cnidarian and bilaterian homeodomains obtained by BLAST search in the GenBank and CnidBase databases. In the present study, the adopted strategy was to maximise taxonomic sampling among the cnidarians in order to have a representative view of their diversity and to allow discussion […]
Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates
[…] nd Medina, M, Coral-Symbiodinium EST Project), Hydra magnipapillata [Bode et al., WashU Hydra EST project], and Nematostella vectensis , were identified first by TBLASTN search of Stellabase  and Cnidbase  with known invertebrate syndecans and then confirmed and extended by BLASTN and TBLASTN searches of dbEST. […]
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