cNLS Mapper pipeline

cNLS Mapper specifications

Information


Unique identifier OMICS_13510
Name cNLS Mapper
Interface Web user interface
Restrictions to use None
Input data A single amino acid sequence
Input format FASTA
Output data A result page including the input sequence with highlighted predicted NLS(s), list of monopartite and bipartite NLSs, their sequence, positions in the protein, and calculated scores
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Shunichi Kosugi <>

Publications for cNLS Mapper

cNLS Mapper IN pipeline

2017
PMCID: 5387057
PMID: 28443083
DOI: 10.3389/fmicb.2017.00612

[…] page ruler protein ladder (thermo fisher scientific)., deduced amino acid sequences of cacv proteins were analyzed for potential nuclear localization (import) and nuclear export signals using cnls mapper (kosugi et al., 2009) and netnes 1.1 server (la cour et al., 2004). secondary structure prediction and alignment of cacv (km589494), tswv nsm (qld-1255, unpublished), tmv p30 […]

cNLS Mapper institution(s)
Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan; Department of Biosciences and Informatics, Faculty of Science and Technology, Keio University, Yokohama, Japan; Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama, Ikoma, Nara, Japan
cNLS Mapper funding source(s)
This work was supported by grants from Yamagata Prefectural Government and Tsuruoka City and from the Ministry of Agriculture, Forestry, and Fisheries of Japan (Rice Genome Project SY-1114).

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