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CNV association software tools | Genome-wide association analysis

Genome-wide association studies (GWAS) using Copy Number Variation (CNV) are becoming a central focus of genetic research. CNVs have successfully provided target genome regions for some disease conditions where simple genetic variation (i.e., SNPs)…
CNVtools
Desktop

CNVtools

A statistical framework for performing case-control CNV association studies…

A statistical framework for performing case-control CNV association studies that applies likelihood ratio testing of quantitative CNV measurements in cases and controls. CNVtools can model large…

ParseCNV
Desktop

ParseCNV

Takes CNV calls as input and creates probe based statistics for CNV occurrence…

Takes CNV calls as input and creates probe based statistics for CNV occurrence in (cases and controls, families, or population with quantitative trait) then calls CNVRs based on neighboring SNPs of…

PedCNV
Desktop

PedCNV

Provides two methods for association study: first, the observed probe intensity…

Provides two methods for association study: first, the observed probe intensity measurement can be directly used to detect the association of copy number variation (CNV) with phenotypes of interest,…

CNVassoc
Desktop

CNVassoc

An R package for carrying out association analysis of common copy number…

An R package for carrying out association analysis of common copy number variants in population-based studies. This package includes functions for testing for association with different classes of…

MinorityReport
Desktop

MinorityReport

Facilitates the comparison of any two sets of genome alignments for the purpose…

Facilitates the comparison of any two sets of genome alignments for the purpose of rapidly identifying the spectrum of nonsynonymous changes, insertions or deletions. MinoritReport also copies number…

DMET-Analyzer
Desktop

DMET-Analyzer

A tool for the automatic association analysis among the variation of the…

A tool for the automatic association analysis among the variation of the patient genomes and the clinical conditions of patients, i.e. the different response to drugs. The proposed system allows: (i)…

CNVRuler
Desktop

CNVRuler

A user-friendly program for CNV-association studies. Outputs from the 10 most…

A user-friendly program for CNV-association studies. Outputs from the 10 most common CNV defining algorithms can be directly used as input files for determining the three different definitions of…

CONAN
Desktop

CONAN

A freely available client-server software solution which provides an intuitive…

A freely available client-server software solution which provides an intuitive graphical user interface for categorizing, analyzing and associating CNVs with phenotypes. Moreover, CONAN assists the…

R-Gada
Desktop

R-Gada

Integrates: (i) data import from most common formats of Affymetrix, Illumina…

Integrates: (i) data import from most common formats of Affymetrix, Illumina and aCGH arrays; (ii) a fast and accurate segmentation algorithm to call CNVs based on Genome Alteration Detection…

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