CNV-RF specifications

Information


Unique identifier OMICS_29311
Name CNV-RF
Alternative name Copy Number Variation-Random Forest
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Python, R, Shell (Bash)
Computer skills Advanced
Stability Stable
Requirements
bwa, bowtie2, picard-tools, samtools
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Bharat Thyagarajan

Publication for Copy Number Variation-Random Forest

CNV-RF citation

library_books

Dynamics of Copy Number Variation in Host Races of the Pea Aphid

2014
Mol Biol Evol
PMCID: 4271520
PMID: 25234705
DOI: 10.1093/molbev/msu266

[…] st likely race, which had to correspond to the race of the collection plant, and lower than 0.25 for the next most likely race. Where these criteria were not met, the clone was excluded from GLMM and CNV RF analyses. […]

CNV-RF institution(s)
Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN, USA; Department of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN, USA; Division of Genetics and Metabolism, University of Minnesota, Minneapolis, MN, USA; Molecular Diagnostics Laboratory, M Health, Minneapolis, MN, USA; Department of Laboratory Medicine and Pathology, University of Minnesota, Minneapolis, MN, USA
CNV-RF funding source(s)
Supported by the Bob Allison Ataxia Research Center and the Department of Laboratory Medicine and Pathology at the University of Minnesota.

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