CNV-seq specifications

Information


Unique identifier OMICS_00339
Name CNV-seq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Aligned read positions
Operating system Unix/Linux
Programming languages Perl, R
Computer skills Advanced
Stability Stable
Maintained Yes

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CNV-seq article

CNV-seq citation

2011
PMCID: 3308051

[…] in td relative to ld in a sliding window. the observed ratios were statistically assessed by estimating the probability of a random occurrence, given no cnv, using the method implemented in the cnv-seq software [69]. only those targets that had at least four overlapping 500-bp windows (250-bp overlap) showing a statistically significant log2 coverage ratio were classified as cnvs. […]

CNV-seq institution(s)
Department of Biological Sciences, National University of Singapore, Singapore

CNV-seq review

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Antoine Rousselin

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Desktop
I have been using this tool since 2009 for the detection of CNV in genes predisposed to breast and ovarian cancer. After having modified a little original script, adapt the parameters this software is very precise (specificity, sensitivity). But it is not suitable for analysis on a large panel of genes.