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CNValidator

Identifies high quality CNVs based on the density of homozygous SNPs and the ratio of heterozygous SNP reads. Using a rigorous statistical model, CNValidator will compute two test statistics and their corresponding p-value estimates for each CNV where the null hypothesis is copy number two. It is ideal for filtering CNVs that are identified by algorithms using only depth of reads such as read depth.

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CNValidator forum

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CNValidator classification

CNValidator specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
Apache License version 2.0
Stability:
Stable

CNValidator distribution

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No versioning.

CNValidator support

Maintainer

  • CNValidator <>

Link to literature

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