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Protocols

CNVassoc specifications

Information


Unique identifier OMICS_02609
Name CNVassoc
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.1
Stability Stable
Requirements
CNVassocData, mixdist, mclust, survival
Maintained Yes

Versioning


No version available

Maintainer


Publication for CNVassoc

CNVassoc citations

 (3)
library_books

A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits

2017
PLoS One
PMCID: 5417718
PMID: 28472114
DOI: 10.1371/journal.pone.0177014

[…] as 0.46 ().An association analysis between the CNV estimates of CNVR112, CNVR157, CNVR298, and CNVR447 and growth-related traits and FA composition in IMF and BF of BC1_LD animals was performed using CNVassoc R package []. The peak intensities (CNV quantitative measurement) and densities of the four analyzed CNVRs (CNVR112, CNVR157, CNVR298 and CNVR447) are shown in . Four latent classes, correspo […]

library_books

MLPAstats: An R GUI package for the integrated analysis of copy number alterations using MLPA data

2011
BMC Bioinformatics
PMCID: 3118163
PMID: 21682923
DOI: 10.1186/1471-2105-12-147

[…] ple in the population. Here, we deal with the detection of CNVs and refer the reader to other sources for a discussion of association testing, which may take uncertainty in CNV calling in to account (CNVassoc package submitted for publication).The detection of CNVs have been made possible by recent advancements in experimental technology and data analysis. In the context of genome-wide studies, a […]

call_split

Alzheimer risk associated with a copy number variation in the complement receptor 1 increasing C3b/C4b binding sites

2011
Mol Psychiatry
PMCID: 3265835
PMID: 21403675
DOI: 10.1038/mp.2011.24
call_split See protocol

[…] Association analyses of the CR1 LCR1 with disease status were performed using CNVassoc, and normalized signal intensities or dosage quotients obtained from MAQ analysis. Association analyses were performed through logistic regression (adjusted for age, gender and APOE ɛ4 genoty […]

Citations

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CNVassoc institution(s)
CIBER Epidemiology and Public Health (CIBERESP), Barcelona, Spain; Cardiovascular Epidemiology & Genetics group, Inflammatory and Cardiovascular Disease Programme, Institut Municipal d'Investigaci/'o Mèdica (IMIM), Barcelona, Spain; Statistics Department, University of Barcelona (UB), Barcelona, Spain; Structural Biology and Biocomputing Programme, Spanish National Cancer Centre (CNIO), Madrid, Spain; Center for Research in Environmental Epidemiology (CREAL), Barcelona, Spain
CNVassoc funding source(s)
The Spanish Ministry of Science and Innovation (MTM2008-02457, BIO2009-12458 and statistical genetics network MTM2010-09526-E (subprograma MTM)). The Juan de la Cierva Program of the Spanish Ministry of Science and Innovation

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