CNVCALL specifications


Unique identifier OMICS_02580
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Niall Cardin <>

Publication for CNVCALL

CNVCALL in publications

PMCID: 5279752
PMID: 28135296
DOI: 10.1371/journal.pone.0170815

[…] hmm-derived cnps, we used the genomic coordinates from the hmm., for each candidate cnp, maximum a posteriori estimates of relative copy number were obtained from a gmm implemented in the r package cnvcall[]. excluding monomorphic regions, we identified 312 and 464 autosomal polymorphic regions in the ea and aa cohorts, respectively ( and figure c in ). after translating mixture component […]

PMCID: 4981989
PMID: 27514831
DOI: 10.1186/s12863-016-0423-0

[…] which a sample belongs was used as a proxy for the copy number class of the sample at that cnvr. the clustering was performed by bayesian hierarchical mixture modelling implemented in the r package cnvcall [, ]., for the initial run of clustering no prior information about the number of classes was included, with the algorithm determining the most likely number of classes from the data […]

PMCID: 2892339
PMID: 20360734
DOI: 10.1038/nature08979

[…] more robust and have better signal to noise properties than do available assays for cnvs . we used two different statistical methods (“cnvtools” which is available as a bioconductor package, and “cnvcall”) in parallel to estimate the number of copy-number classes at each cnv and assign individuals to these classes. see som for further details. illustrates three multi-allelic cnvs […]

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CNVCALL institution(s)
Department of Statistics, University of Oxford, Oxford, UK

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