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cnvCapSeq specifications


Unique identifier OMICS_05722
Name cnvCapSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


Publication for cnvCapSeq

cnvCapSeq citation


An evaluation of copy number variation detection tools for cancer using whole exome sequencing data

BMC Bioinformatics
PMCID: 5452530
PMID: 28569140
DOI: 10.1186/s12859-017-1705-x

[…] developed by the same group using a similar method, which adtex is the modified version of the convex. as a result, we only considered adtex. more recent tools, such as canoes [], exomdepth [], and cnvcapseq [], are not used specifically for cancer; therefore we did not consider them in this study. the list of the tools that we considered in this study and their general characteristics […]

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cnvCapSeq institution(s)
Department of Genomics of Common Disease, School of Public Health, Imperial College London, London, UK; Genome Institute of Singapore, Singapore; Genome Institute of Singapore, Singapore; Institute of Medical Molecular Genetics, University of Zurich, Schlieren, Switzerland; Singapore Eye Research Institute, Singapore National Eye Center, Singapore; Department of Ophthalmology, National University of Singapore, Singapore; Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, UK; Institute for Molecular Bioscience, University of Queensland, St Lucia, Australia

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