cnvCurator specifications

Unique identifier:
OMICS_10514
Interface:
Graphical user interface
Input data:
The inputs for cnvCurator include 1) the CNV calling results in segmented data file format from a chosen somatic CNV caller 2) the read depth file in bigWig format for tumor and matched normal sample, separately, 3) the BAF file in bigWig format for tumor sample, and 4) the read alignment file in Binary Alignment/Map (BAM) format for tumor and matched normal sample, separately.
Programming languages:
Java
Computer skills:
Medium
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU Lesser General Public License version 3.0
Version:
1.0
Maintained:
Yes

versioning

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cnvCurator support

Maintainer

  • Jianmin Wang <>

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Publications

Institution(s)

Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, USA

Funding source(s)

This work was supported by an award from the Roswell Park Alliance Foundation.

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