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CNVDetector specifications


Unique identifier OMICS_02581
Name CNVDetector
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Kun-Mao Chao

Publication for CNVDetector

CNVDetector citation


Whole Genome Sequences of DA and F344 Rats with Different Susceptibilities to Arthritis, Autoimmunity, Inflammation and Cancer

PMCID: 3730908
PMID: 23695301
DOI: 10.1534/genetics.113.153049

[…] variation (cnv) candidates using the alignment results, we first obtained the depth of each base along the reference genome using soapcoverage ( we then used cnvdetector (), a program developed by bgi, to calculate the mean depth of 100-bp sliding windows along each chromosome and to select the candidate regions of cnv based on the difference of depth […]

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CNVDetector institution(s)
Department of Computer Science and Information Engineering, Graduate Institute of Biomedical Electronics and Bioinformatics and Graduate Institute of Networking and Multimedia, National Taiwan University, Taipei, Taiwan

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