CNVFinder statistics

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Tool usage distribution map

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Associated diseases

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CNVFinder specifications

Information


Unique identifier OMICS_02576
Name CNVFinder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Publication for CNVFinder

CNVFinder in publications

 (10)
PMCID: 4409114
PMID: 25909454
DOI: 10.1371/journal.pone.0121846

[…] probes within the cnp region. the intensity summaries are compared in aggregate across all samples to intensity summaries previously observed in training data to assign a copy number state call., cnvfinder developed at the welcome trust sanger institute uses a dynamic, multiple-threshold based approach to allow robust classification of copy number changes in data of varying qualities. […]

PMCID: 3938728
PMID: 24587348
DOI: 10.1371/journal.pone.0090391

[…] false discovery rate of ∼5%), ii) birdsuite calls with copy number states other than 2 were retained; iii) canary cnp calls with cn states different from the population mode were retained., cnvfinder developed at the welcome trust sanger institute uses a dynamic, multiple-threshold based approach to allow robust classification of copy number changes in data of varying qualities. […]

PMCID: 3700933
PMID: 23843967
DOI: 10.1371/journal.pone.0066843

[…] probes within the cnp region. the intensity summaries are compared in aggregate across all samples to intensity summaries previously observed in training data to assign a copy number state call., cnvfinder developed at the welcome trust sanger institute uses a dynamic, multiple-threshold based approach to allow robust classification of copy number changes in data of varying qualities. […]

PMCID: 3751642
PMID: 23763846
DOI: 10.1186/1471-2164-14-398

[…] (agilent technologies). log2ratio profiles were then normalized using acgh-spline to remove dye biases and reduce experimental noise []. cnv detection was performed using a modified version of cnvfinder [], where we optimized empirically significance thresholds using replicate self-self hybridizations. the cnvrs were obtained by merging overlapping cnvs according to similar criteria […]

PMCID: 3712326
PMID: 23697330
DOI: 10.1186/1471-2105-14-164

[…] simulated data []. however, there is no way to verify if the assumptions of the simulation hold in a real data set, so the value of the comparison is limited. in another article, the accuracy of the cnvfinder algorithm was assessed using quantitative pcr []. but quantitative pcr is low-throughput and costly, so is not routinely done as a quality control. so in fact there are no previous studies […]


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CNVFinder institution(s)
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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