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CNVnator

An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing. Overall, for CNVs accessible by RD, CNVnator has high sensitivity (86%-96%), low false-discovery rate (3%-20%), high genotyping accuracy (93%-95%), and high resolution in breakpoint discovery (<200 bp in 90% of cases with high sequencing coverage).

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1 user review

1 user review

huangli's avatar image

huangli

hi! I have a problerm in using this tool, hope for your help!!!
it's an error in cnvnator -root -partition
the error file is very big and for example like this:
$head WB-l.CNV.call.sh.e7336323
Abnormal range (0, -1)
Abnormal range (1, 0)
Abnormal range (2, 1)
Abnormal range (3, 2)
Abnormal range (4, 3)
Abnormal range (5, 4)
Abnormal range (6, 5)
Abnormal range (7, 6)
Abnormal range (9, 8)
Abnormal range (10, 9)
.........

CNVnator forum

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CNVnator classification

CNVnator specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Input format:
BAM
Programming languages:
C++
Stability:
Stable

CNVnator distribution

versioning

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Credits

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Publications

Institution(s)

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA

Link to literature

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