CNVnator specifications

Unique identifier:
OMICS_00343
Interface:
Command line interface
Input format:
BAM
Programming languages:
C++
Version:
0.3.3
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

versioning

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No versioning.

CNVnator distribution

download

CNVnator support

Documentation

Maintainers

  • Mark Gerstein <>
  • Alexej Abyzov <>

forum

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No open topic.

Credits

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Publications

Institution(s)

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA; Department of Psychiatry and Behavioral Sciences, School of Medicine, Stanford University, Stanford, CA, USA; Department of Genetics, Stanford University, Stanford, CA, USA; Department of Computer Science, Yale University, New Haven, CT, USA

Funding source(s)

Supported by the NIH and from the AL Williams Professorship funds; by the Yale University Biomedical High-Performance Computing Center, its support team, and NIH grant RR19895.

User review

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1 user review

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huangli's avatar image

huangli

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hi! I have a problerm in using this tool, hope for your help!!!
it's an error in cnvnator -root -partition
the error file is very big and for example like this:
$head WB-l.CNV.call.sh.e7336323
Abnormal range (0, -1)
Abnormal range (1, 0)
Abnormal range (2, 1)
Abnormal range (3, 2)
Abnormal range (4, 3)
Abnormal range (5, 4)
Abnormal range (6, 5)
Abnormal range (7, 6)
Abnormal range (9, 8)
Abnormal range (10, 9)
.........

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