CNVPanelizer statistics

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Citations per year

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Popular tool citations

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Associated diseases

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CNVPanelizer specifications

Information


Unique identifier OMICS_19452
Name CNVPanelizer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.12.0
Stability Stable
Requirements
methods, stats, plyr, gplots, grid, graphics, BiocGenerics, IRanges, GenomicRanges, Rsamtools, utils, testthat, S4Vectors, GenomeInfoDb, grDevices, ggplot2, RUnit, knitr, reshape2, foreach, stringr, shiny, NOISeq, R(>=3.2.0), openxlsx, exomeCopy, shinyFiles, shinyjs
Maintained Yes

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Maintainer


  • person_outline Thomas Wolf <>

CNVPanelizer in publications

 (2)
PMCID: 5288500
PMID: 28120820
DOI: 10.1038/ncomms14093

[…] highly concordant with respect to driver-gene alterations, they display clear differences in intronic and synonymous mutations., next we determined cnvs from our panel-sequencing data by employing cnvpanelizer, an algorithm specifically designed to estimate copy number frequencies using targeted massive parallel sequencing data. we found cnvs deviating from the diploid state of normal tissues […]

PMCID: 5294251
PMID: 28112719
DOI: 10.1038/oncsis.2016.88

[…] pipeline and mutations were selected regarding prediction of potential impact on protein function by algorithms sift/polyphen, and mutationtaster. analysis of cnv was performed with r package cnvpanelizer using bam/bai sequencing output files. determination of cnvs of resistant mewo cells was referenced to sensitive (mewopar) cells., all quantitative real-time reverse transcriptase–pcr […]


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