CNVrd protocols

CNVrd specifications


Unique identifier OMICS_03924
Name CNVrd
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.0
Stability Stable
Requirements methods, VariantAnnotation, parallel, rjags, ggplot, gridExtra
Maintained Yes


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  • person_outline Hoang Nguyen <>

Publications for CNVrd

CNVrd IN pipeline

PMCID: 5883389
PMID: 29682616
DOI: 10.21956/wellcomeopenres.15113.r31105

[…] to allow powerful conclusions to be derived from high-throughput data sources, while at the same time ensuring that genotypes and copy numbers were properly substantiated by direct dna typing., cnvrd2 does a good job of extracting copy number states for ccl3l1/ccl4l1 from 1000 genomes project sequence data, and the concordance in directly typed samples (figure 1) is impressive. […]

CNVrd institution(s)
Department of Biochemistry, University of Otago Dunedin, New Zealand

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