CNVRuler statistics

info info

Citations per year

info

Popular tool citations

chevron_left CNV association chevron_right
info

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

CNVRuler specifications

Information


Unique identifier OMICS_07495
Name CNVRuler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Yeun-Jun Chung <>

Publication for CNVRuler

CNVRuler citations

 (4)
library_books

A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits

2017
PMCID: 5417718
PMID: 28472114
DOI: 10.1371/journal.pone.0177014

[…] the cnvrs were determined by merging cnvs identified in two or more animals when the overlap is of at least 1 bp, according to the criteria proposed by redon et al. []. this merging was performed by cnvruler software []. regions of very low density of overlapping (recurrence parameter<0.1) were not used in the analyses for a more robust definition of the beginning and end regions., based […]

library_books

Genome Wide Detection of CNVs and Their Association with Meat Tenderness in Nelore Cattle

2016
PMCID: 4922624
PMID: 27348523
DOI: 10.1371/journal.pone.0157711

[…] cnvrs to establish relationships between structural genomic variation and mt., we used snp genotype data from 723 male nelore animals to infer 49,997 cnv calls and 2,649 cnvrs using penncnv [] and cnvruler [], respectively (see for genotyping, cnv calling and cnvr concatenation). the cnvrs represent 6.5% of the bos taurus genome (170.6 mb, genomic positions listed in ). the chromosomal […]

library_books

Identification of Copy Number Variations in Xiang and Kele Pigs

2016
PMCID: 4740446
PMID: 26840413
DOI: 10.1371/journal.pone.0148565

[…] because the samples were obtained from multiple locations across congjiang county, china. thus, pedigree information was not incorporated into the analysis. moreover, the cnvs were aggregated using cnvruler software []., a hierarchical clustering analysis for all test samples was performed according to their cnv similarities. we first converted the copy number data to a scoring matrix […]

library_books

Identification of rare germline copy number variations over represented in five human cancer types

2015
PMCID: 4381456
PMID: 25644941
DOI: 10.1186/s12943-015-0292-6

[…] studies with control (migen). cthe median, mean and standard deviation (sd) of the number of cnvs per individual are shown., to merge individual cnvs into common cnv regions (cnvr), we used cnvruler [], which is one of the few tools that integrate multiple methods for calculating cnvrs, with several statistical association tests and options for population stratification. to identify […]


Want to access the full list of citations?
CNVRuler institution(s)
Integrated Research Center for Genome Polymorphism, Department of Microbiology, School of Medicine, Catholic University of Korea, Seoul, Korea

CNVRuler reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CNVRuler