CNVRuler statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.


Citations per year

Citations chart

Popular tool citations

chevron_left CNV association chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

CNVRuler specifications


Unique identifier OMICS_07495
Name CNVRuler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, R
Computer skills Advanced
Stability Stable
Maintained Yes


Add your version


  • person_outline Yeun-Jun Chung <>

Publication for CNVRuler

CNVRuler in publications

PMCID: 5417718
PMID: 28472114
DOI: 10.1371/journal.pone.0177014

[…] the cnvrs were determined by merging cnvs identified in two or more animals when the overlap is of at least 1 bp, according to the criteria proposed by redon et al. []. this merging was performed by cnvruler software []. regions of very low density of overlapping (recurrence parameter<0.1) were not used in the analyses for a more robust definition of the beginning and end regions., based […]

PMCID: 4922624
PMID: 27348523
DOI: 10.1371/journal.pone.0157711

[…] cnvrs to establish relationships between structural genomic variation and mt., we used snp genotype data from 723 male nelore animals to infer 49,997 cnv calls and 2,649 cnvrs using penncnv [] and cnvruler [], respectively (see for genotyping, cnv calling and cnvr concatenation). the cnvrs represent 6.5% of the bos taurus genome (170.6 mb, genomic positions listed in ). the chromosomal […]

PMCID: 4740446
PMID: 26840413
DOI: 10.1371/journal.pone.0148565

[…] because the samples were obtained from multiple locations across congjiang county, china. thus, pedigree information was not incorporated into the analysis. moreover, the cnvs were aggregated using cnvruler software []., a hierarchical clustering analysis for all test samples was performed according to their cnv similarities. we first converted the copy number data to a scoring matrix […]

PMCID: 4381456
PMID: 25644941
DOI: 10.1186/s12943-015-0292-6

[…] studies with control (migen). cthe median, mean and standard deviation (sd) of the number of cnvs per individual are shown., to merge individual cnvs into common cnv regions (cnvr), we used cnvruler [], which is one of the few tools that integrate multiple methods for calculating cnvrs, with several statistical association tests and options for population stratification. to identify […]

To access a full list of publications, you will need to upgrade to our premium service.

CNVRuler institution(s)
Integrated Research Center for Genome Polymorphism, Department of Microbiology, School of Medicine, Catholic University of Korea, Seoul, Korea

CNVRuler reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CNVRuler