CNVRuler statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CNVRuler

Tool usage distribution map

This map represents all the scientific publications referring to CNVRuler per scientific context
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CNVRuler specifications


Unique identifier OMICS_07495
Name CNVRuler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, R
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


  • person_outline Yeun-Jun Chung

Publication for CNVRuler

CNVRuler citations


A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits

PLoS One
PMCID: 5417718
PMID: 28472114
DOI: 10.1371/journal.pone.0177014

[…] .The CNVRs were determined by merging CNVs identified in two or more animals when the overlap is of at least 1 bp, according to the criteria proposed by Redon et al. []. This merging was performed by CNVRuler software []. Regions of very low density of overlapping (recurrence parameter<0.1) were not used in the analyses for a more robust definition of the beginning and end regions. […]


Genome Wide Detection of CNVs and Their Association with Meat Tenderness in Nelore Cattle

PLoS One
PMCID: 4922624
PMID: 27348523
DOI: 10.1371/journal.pone.0157711

[…] We used SNP genotype data from 723 male Nelore animals to infer 49,997 CNV calls and 2,649 CNVRs using PennCNV [] and CNVRuler [], respectively (see for genotyping, CNV calling and CNVR concatenation). The CNVRs represent 6.5% of the Bos taurus genome (170.6 Mb, genomic positions listed in ). The chromosomal proport […]


Identification of Copy Number Variations in Xiang and Kele Pigs

PLoS One
PMCID: 4740446
PMID: 26840413
DOI: 10.1371/journal.pone.0148565

[…] s because the samples were obtained from multiple locations across Congjiang County, China. Thus, pedigree information was not incorporated into the analysis. Moreover, the CNVs were aggregated using CNVRuler software []. […]


Identification of rare germline copy number variations over represented in five human cancer types

Mol Cancer
PMCID: 4381456
PMID: 25644941
DOI: 10.1186/s12943-015-0292-6

[…] Illustrative examples of germline CNVRs are shown in Figure  with the remaining CNVRs (in Table ) illustrated in (Additional file : Figure S1). CNVRuler (v1.3) was used to merge individual CNVs into common CNV regions (CNVR) for each cancer and control set []. CNVRs that did not have a recurrence of > 0.1 were filtered from the list. CNVR fre […]

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CNVRuler institution(s)
Integrated Research Center for Genome Polymorphism, Department of Microbiology, School of Medicine, Catholic University of Korea, Seoul, Korea

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