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CNVtools | A statistical method for case-control association testing with copy number variation

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A statistical framework for performing case-control CNV association studies that applies likelihood ratio testing of quantitative CNV measurements in cases and controls. CNVtools can model large batch effects that do not follow group membership, which is an important consideration in large-scale association studies. It is based on methods that are robust to differential errors and noisy data and can achieve maximal theoretical power. CNVtools‘ computational efficiency is such that it would be feasible to use this software to test for CNV associations genome-wide (>10,000 loci).

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CNVtools forum

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CNVtools classification

CNVtools specifications

Unique identifier:
OMICS_02090
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
R
Version:
1.60.0
Requirements:
Survival

CNVtools distribution

versioning

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No versioning.

CNVtools support

Documentation

Maintainer

  • Chris Barnes <>

Credits

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Publications

Institution(s)

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.