CNVVdb specifications

Information


Unique identifier OMICS_22128
Name CNVVdb
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed

Maintainer


This tool is not maintained anymore.

Additional information


http://idv.sinica.edu.tw/trees/CNVVdb/Guideline.html

Publication for CNVVdb

CNVVdb citations

 (2)
library_books

A classification model for distinguishing copy number variants from cancer related alterations

2010
BMC Bioinformatics
PMCID: 2897829
PMID: 20525196
DOI: 10.1186/1471-2105-11-297

[…] on, smaller CNVs are less likely to be included into the DGV since they are detected less frequently in older, low-resolution arrays.There are other resources available that contain CNVs, for example CNVVdb (http://cnvvdb.genomics.sinica.edu.tw), DECIPHER (https://decipher.sanger.ac.uk/application/), 1000 genomes project (http://www.genome.gov/27528684) and dbVAR (http://www.ncbi.nlm.nih.gov/dbvar […]

library_books

Gene Family Size Conservation Is a Good Indicator of Evolutionary Rates

2010
Mol Biol Evol
PMCID: 2908708
PMID: 20194423
DOI: 10.1093/molbev/msq055

[…] g genes that have not been annotated by Ensembl, we downloaded all the genomic regions that were alignable with Ensembl-annotated protein-coding genes in the same-species self-chained alignments from CNVVdb () at http://cnvvdb.genomics.sinica.edu.tw/. Subsequently, all the protein isoforms of each Ensembl gene were aligned against these sequences using the BLAT protein-to-DNA alignment package (). […]

CNVVdb institution(s)
Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Miaoli County, Taiwan; Genomics Research Center, Academia Sinica, Taipei, Taiwan
CNVVdb funding source(s)
Supported by the National Health Research Institutes (NHRI), Taiwan (NHRI-EX98-9408PC); National Science Council, Taiwan (NSC 96-2628-B-001-005-MY3); NHRI intramural funding.

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