CoPAP specifications

Unique identifier:
OMICS_13089
Interface:
Web user interface
Input data:
Sequences, phylogenetic tree, characters annotation file
Output data:
Inferred co-evolutionary network, global properties of the network, phylogenetic visualization of the presence-absence pattern for given genes, co-evolutionary analysis statistics
License:
GNU General Public License version 3.0
Version:
01.261
Requirements:
Cytoscape
Name:
Co-evolution of Presence-Absence Patterns
Restrictions to use:
None
Input format:
FASTA, NEXUS, PHYLIP, Newick, Nexus
Programming languages:
C++
Computer skills:
Basic
Stability:
Stable
Maintained:
Yes

CoPAP specifications

Unique identifier:
OMICS_13089
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, NEXUS, PHYLIP, Newick, Nexus
Operating system:
Unix/Linux, Windows
License:
GNU General Public License version 3.0
Version:
01.261
Requirements:
Cytoscape
Name:
Co-evolution of Presence-Absence Patterns
Interface:
Command line interface
Input data:
Sequences, phylogenetic tree, characters annotation file
Output data:
Inferred co-evolutionary network, global properties of the network, phylogenetic visualization of the presence-absence pattern for given genes, co-evolutionary analysis statistics
Programming languages:
C++
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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CoPAP distribution

download

CoPAP support

Documentation

Maintainer

  • Tal Pupko <>
  • Tal Pupko <>

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Credits

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Publications

Institution(s)

Department of Cell Research and Immunology, George S Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel

Funding source(s)

Post-doctoral grant from the AXA Research Fund; the Edmond J. Safra Center for Bioinformatics at Tel-Aviv University; the Converging Technology program of the Israeli Council for Higher Education; Israel Science Foundation [878/09]

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