CoPAP specifications

Information


Unique identifier OMICS_13089
Name CoPAP
Alternative name Co-evolution of Presence-Absence Patterns
Interface Web user interface
Restrictions to use None
Input data Sequences, phylogenetic tree, characters annotation file
Input format FASTA, NEXUS, PHYLIP, Newick, Nexus
Output data Inferred co-evolutionary network, global properties of the network, phylogenetic visualization of the presence-absence pattern for given genes, co-evolutionary analysis statistics
Programming languages C++
License GNU General Public License version 3.0
Computer skills Basic
Version 01.261
Stability Stable
Requirements Cytoscape
Maintained Yes

Documentation


Maintainer


  • person_outline Tal Pupko <>

Information


Unique identifier OMICS_13089
Name CoPAP
Alternative name Co-evolution of Presence-Absence Patterns
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sequences, phylogenetic tree, characters annotation file
Input format FASTA, NEXUS, PHYLIP, Newick, Nexus
Output data Inferred co-evolutionary network, global properties of the network, phylogenetic visualization of the presence-absence pattern for given genes, co-evolutionary analysis statistics
Operating system Unix/Linux, Windows
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 01.261
Stability Stable
Requirements Cytoscape
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Tal Pupko <>

CoPAP article

CoPAP institution(s)
Department of Cell Research and Immunology, George S Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
CoPAP funding source(s)
Post-doctoral grant from the AXA Research Fund; the Edmond J. Safra Center for Bioinformatics at Tel-Aviv University; the Converging Technology program of the Israeli Council for Higher Education; Israel Science Foundation [878/09]

CoPAP reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CoPAP