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circlncRNAnet

Maps the functional networks of long or circular forms of non-coding RNAs (ncRNA). circlncRNAnet allows in-depth analyses of ncRNA biology. The software provides three features: (1) a framework for processing of user-defined next-generation sequencing (NGS)-based expression data, (2) assigning and assessing the regulatory networks of ncRNAs selected by users and (3) a workflow suitable for all types of ncRNAs. It can be used to get multiple lines of functionally relevant information on the circular RNA/ long non-coding RNA (circRNAs/lncRNAs) of users’ interest.

AMEN / Annotation Mapping Expression and Network

Enables biological and medical researchers with basic bioinformatics training to manage and explore genome annotation, chromosomal mapping, protein -protein interaction (PPI), expression profiling and proteomics data. AMEN provides modules for (i) uploading and pre-processing data from microarray expression profiling experiments, (ii) detecting groups of significantly co-expressed genes, and (iii) searching for enrichment of functional annotations within those groups. AMEN facilitates the design and execution of optimized procedures for processing, analysis and interpretation of multifaceted high-throughput data.