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CoBaltDB specifications

Information


Unique identifier OMICS_01620
Name CoBaltDB
Restrictions to use None
Maintained No

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Publication for CoBaltDB

CoBaltDB citations

 (3)
library_books

Current opportunities and challenges in microbial metagenome analysis—a bioinformatic perspective

2012
Brief Bioinform
PMCID: 3504927
PMID: 22966151
DOI: 10.1093/bib/bbs039

[…] the Pfam [] and TIGRfam [] databases, as well as predictions of tRNA [] and rRNA [] genes, signal peptides [], transmembrane regions [, ], CRISPR repeats [] and sub-cellular localization (e.g. using CoBaltDB [], GNBSL [], PSLpred [], CELLO [] or PSORT-B []). Also, dedicated databases are available for special functions, for example the CAZY [, ] and dbCAN (http://csbl.bmb.uga.edu/dbCAN/) database […]

library_books

Surface Proteome Analysis and Characterization of Surface Cell Antigen (Sca) or Autotransporter Family of Rickettsia typhi

2012
PLoS Pathog
PMCID: 3415449
PMID: 22912578
DOI: 10.1371/journal.ppat.1002856

[…] gnal peptides (i.e. non-classically secreted proteins). This algorithm also integrates information on post-translational and localization aspects of the protein from other feature prediction servers. CoBaltDB , a comprehensive database that compiles prediction outputs from multiple sources regarding complete prokaryotic proteomes, was also utilized for comparison of subcellular localization predic […]

library_books

SORGOdb: Superoxide Reductase Gene Ontology curated DataBase

2011
BMC Microbiol
PMCID: 3116461
PMID: 21575179
DOI: 10.1186/1471-2180-11-105

[…] ag, ID, organism name, replicon and genome status), previous (PRODOM, PFAM and CDD) and new (SORGOdb) classification, position in the SORGOdb distance tree, SOR cellular localization prediction using CoBaltDB [], genomic organisation for SOR and SOD loci, synteny viewer, PMID and PDB references. Images were generated using Python scripts from CGview (genomic map), MyDomains (SORGOdb domains repres […]

Citations

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CoBaltDB institution(s)
CNRS UMR 6026, ICM, Equipe BaSIC, Université de Rennes 1, Campus de Beaulieu, Rennes, France

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