Tool stats & trends
Looking to identify usage trends or leading experts?
|Restrictions to use||None|
Publication for CoBaltDB
Current opportunities and challenges in microbial metagenome analysis—a bioinformatic perspective
[…] the Pfam  and TIGRfam  databases, as well as predictions of tRNA  and rRNA  genes, signal peptides , transmembrane regions [, ], CRISPR repeats  and sub-cellular localization (e.g. using CoBaltDB , GNBSL , PSLpred , CELLO  or PSORT-B ). Also, dedicated databases are available for special functions, for example the CAZY [, ] and dbCAN (http://csbl.bmb.uga.edu/dbCAN/) database […]
Surface Proteome Analysis and Characterization of Surface Cell Antigen (Sca) or Autotransporter Family of Rickettsia typhi
[…] gnal peptides (i.e. non-classically secreted proteins). This algorithm also integrates information on post-translational and localization aspects of the protein from other feature prediction servers. CoBaltDB , a comprehensive database that compiles prediction outputs from multiple sources regarding complete prokaryotic proteomes, was also utilized for comparison of subcellular localization predic […]
SORGOdb: Superoxide Reductase Gene Ontology curated DataBase
[…] ag, ID, organism name, replicon and genome status), previous (PRODOM, PFAM and CDD) and new (SORGOdb) classification, position in the SORGOdb distance tree, SOR cellular localization prediction using CoBaltDB , genomic organisation for SOR and SOD loci, synteny viewer, PMID and PDB references. Images were generated using Python scripts from CGview (genomic map), MyDomains (SORGOdb domains repres […]
Looking to check out a full list of citations?
Be the first to review CoBaltDB