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Cobweb specifications

Information


Unique identifier OMICS_32472
Name Cobweb
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.0
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Joachim von Eichborn

Information


Unique identifier OMICS_32472
Name Cobweb
Interface Web user interface
Restrictions to use None
Programming languages Java
License GNU General Public License version 3.0
Computer skills Basic
Version 1.1.1
Stability Stable
Maintained Yes

Download


github.png

Maintainer


  • person_outline Joachim von Eichborn

Publication for Cobweb

Cobweb citations

 (63)
library_books

Cross talk between microtubules and the linker of nucleoskeleton complex plays a critical role in the adipogenesis of human adipose derived stem cells

2018
PMCID: 5930445
PMID: 29720241
DOI: 10.1186/s13287-018-0836-y

[…] F-actin and intermediate filament vimentin remodeling occurs during stem cell adipogenesis []. Our data also suggested that microtubules are present around the nucleus at a high density and formed a cobweb-like structure. The cytoskeleton plays important roles in regulation of nuclear shape [, ], and microtubules resist nuclear deformations in the major axis while microfilaments resist deformatio […]

library_books

Potential formula of the nonregular m × n fan network and its application

2018
Sci Rep
PMCID: 5895822
PMID: 29643340
DOI: 10.1038/s41598-018-24164-x

[…] m separated nodes, and Chair, researched two resistor networks by the Laplacian matrix method. In 2011 ref. built a new method to study network model, next Tan, Zhou and Yang proposed a conjecture of cobweb model, shortly after that Izmailian et al. improved the Laplacian method and proved the validity of the conjecture, and gave a general resistance formula of the cobweb network, next the globe n […]

library_books

Adrenal Ganglioneuroblastoma in an Adult: A Rare Case Report

2018
PMCID: 5903387
PMID: 29696040
DOI: 10.5812/ijem.63055

[…] . In some areas, tumor cells were surrounded by ganglioneuromatous-like cells characterized by collections of ganglion cells. Many of these were immature multinucleated cells within a fine fibrillary cobweb-like network (). The diagnosis was compatible with a ganglioneuroblastoma of the adrenal gland; the nodular classic type. In immunohistochemical staining, the neoplastic cells were immunoreacti […]

library_books

A phylogenetically based nomenclature for Cordycipitaceae (Hypocreales)

2017
PMCID: 5729716
PMID: 29242779
DOI: 10.5598/imafungus.2017.08.02.08

[…] and E. album, the latter species was formerly classified in Beauveria, and most recently placed in Parengyodontium (see below). added four more species. The genus is restricted here to species with cobweb-like colonies that produce dense clusters of denticles on elongated rachides. Conidia are hyaline and globose to subglobose. No sexual reproductive morph has been linked to Engyodontium. Molecu […]

library_books

The Habitats Humans Provide: Factors affecting the diversity and composition of arthropods in houses

2017
Sci Rep
PMCID: 5681556
PMID: 29127355
DOI: 10.1038/s41598-017-15584-2

[…] common rooms (Fig. ).We found that there was a great deal of homogeneity in the most frequently recovered arthropod families across all rooms—except for the attic and the basement. Ants (Formicidae), cobweb spiders (Theridiidae), carpet beetles (Dermestidae), dark winged fungus gnats (Sciaridae), and gall midges (Cecidomyiidae) were almost always the five most frequently found families in bedrooms […]

library_books

An RNA Virome Associated to the Golden Orb Weaver Spider Nephila clavipes

2017
Front Microbiol
PMCID: 5660997
PMID: 29118750
DOI: 10.3389/fmicb.2017.02097

[…] e. The viruses were identified in metagenomics libraries of the mygalomorph spider Hexura picea; the Tetragnathidae orbweaver Metellina curtisi; the triangle-weaving orbweaver Hyptiotes gertschi; the cobweb weaver Theridion simile and the crab spider Xysticus cristatus. The identified viruses presented low sequence similarity to reported picornaviruses (24–47% by amino acid to the polyprotein) and […]

Citations

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Cobweb institution(s)
Structural Bioinformatics Group, Institute for Physiology, Charité – Universitätsmedizin Berlin, Berlin, Germany; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA
Cobweb funding source(s)
Supported by International Research Training Group on Genomics and Systems Biology of Molecular Networks (GRK1360); Federal Ministry of Education and Research (MedSys Project, 0315450 A); European Union (SynSys Project).

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