CoCiter statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CoCiter

Tool usage distribution map

This map represents all the scientific publications referring to CoCiter per scientific context
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CoCiter specifications


Unique identifier OMICS_16312
Name CoCiter
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.4
Stability No
Maintained No


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Publication for CoCiter

CoCiter citations


Recently Evolved Tumor Suppressor Transcript TP73 AS1 Functions as Sponge of Human Specific miR 941

Mol Biol Evol
PMCID: 5913670
PMID: 29474580
DOI: 10.1093/molbev/msy022

[…] r network construction. The network module was identified using CFinder () requiring clique numbers of >2. The association between network module genes and cell migration function was estimated using Cociter with the term “cell migration” with P-value cutoff 0.01. […]


Partial depletion of yolk during zebrafish embryogenesis changes the dynamics of methionine cycle and metabolic genes

BMC Genomics
PMCID: 4455928
PMID: 26040990
DOI: 10.1186/s12864-015-1654-6

[…] Co-citation enrichments are useful to reveal associations between large gene sets and diseases. We applied the CoCiter tool [] to look for associations between DE genes and “hypertension”, “obesity”, “type 2 diabetes” and “osteoporosis”, i.e. metabolic diseases of which the susceptibility is increased after ea […]


Deep sequencing reveals a novel class of bidirectional promoters associated with neuronal genes

BMC Genomics
PMCID: 4094773
PMID: 24916849
DOI: 10.1186/1471-2164-15-457

[…] was estimated by dinucleotide shuffle of NBiP sequences. Specifically, NBiP sequences were subjected to dinucleotide shuffle 1,000 times and the MATCH algorithm was applied to the shuffled sequences. CoCiter [] was used to check the significance of association between transcription factors enriched in NBiP and KBiP, with the terms “neuron” and “neural”, respectively. […]

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CoCiter funding source(s)
This project was funded by grants from the National Natural Science Foundation of China (NSFC; grants 31210103916 and 91019019), Chinese Ministry of Science and Technology (grant 2011CB504206), Chinese Academy of Sciences (CAS; grants KSCX2-EW-R-02 and KSCX2-EW-J-15 and YZ201243), Stem Cell Leading Project (XDA01010303) and Shanghai Academic Leader Project (11XD1405700).

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