CODA statistics

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CODA specifications


Unique identifier OMICS_08519
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No


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Publication for CODA

CODA in publications

PMCID: 5312500
PMID: 28228926
DOI: 10.1016/j.csbj.2017.01.010

[…] r , loopy , loopbuilder , leap , and the loop modelling routine within rosetta ., the idea of a hybrid loop modelling algorithm, combining knowledge-based and ab initio approaches, has been explored. coda  generates decoys using a knowledge-based method and an ab initio method separately, then combines the two decoy sets and makes a consensus prediction. martin et al. , whitelegg and rees , and fa […]

PMCID: 1440879
PMID: 16617149
DOI: 10.1093/nar/gkl156

[…] search algorithm (). this idea has been generalized: loops were selected from a fragment databank, optimized and ranked using the charmm energy function (). deane and blundell presented coda (), a combination of two algorithms: fread, a knowledge-based method, and petra, an ab initio method ()., here we present the construction of a loop database (search space) that is an exhaustive […]

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CODA institution(s)
Department of Biochemistry, University of Cambridge, Cambridge, UK

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