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Associated diseases

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CODA specifications

Information


Unique identifier OMICS_08519
Name CODA
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for CODA

CODA in publications

 (2)
PMCID: 5312500
PMID: 28228926
DOI: 10.1016/j.csbj.2017.01.010

[…] r , loopy , loopbuilder , leap , and the loop modelling routine within rosetta ., the idea of a hybrid loop modelling algorithm, combining knowledge-based and ab initio approaches, has been explored. coda  generates decoys using a knowledge-based method and an ab initio method separately, then combines the two decoy sets and makes a consensus prediction. martin et al. , whitelegg and rees , and fa […]

PMCID: 1440879
PMID: 16617149
DOI: 10.1093/nar/gkl156

[…] search algorithm (). this idea has been generalized: loops were selected from a fragment databank, optimized and ranked using the charmm energy function (). deane and blundell presented coda (), a combination of two algorithms: fread, a knowledge-based method, and petra, an ab initio method ()., here we present the construction of a loop database (search space) that is an exhaustive […]


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CODA institution(s)
Department of Biochemistry, University of Cambridge, Cambridge, UK

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