CodaChrome statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CodaChrome
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CodaChrome specifications

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Unique identifier OMICS_22632
Name CodaChrome
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Medium
Version 1.1
Stability No
Maintained No

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Publication for CodaChrome

CodaChrome citation

library_books

Rice Infecting Pseudomonas Genomes Are Highly Accessorized and Harbor Multiple Putative Virulence Mechanisms to Cause Sheath Brown Rot

2015
PLoS One
PMCID: 4589537
PMID: 26422147
DOI: 10.1371/journal.pone.0139256

[…] ASH 2.0 [] website was used. In addition, selected genes were BLASTp against the Pseudomonas dataset with E-values less than 1e-20 and with a minimum identity of 20%. These were then visualized using CodaChrome 1.1 []. Whole-genome alignment was performed in two steps: first, we reordered contigs of Pfv-like and Pfv genomes against IRRI 6609 using MAUVE 2.3.1 [] under default parameters. Locally c […]


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CodaChrome institution(s)
Department of Molecular, Cellular and Developmental Biology, University of Colorado at Boulder, Boulder, CO, USA; BioFrontiers Institute, University of Colorado at Boulder, Boulder, CO, USA; Computational Biosciences Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA

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