CodaChrome statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CodaChrome

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CodaChrome specifications


Unique identifier OMICS_22632
Name CodaChrome
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Medium
Version 1.1
Stability No
Maintained No




No version available


This tool is not maintained anymore.

Publication for CodaChrome

CodaChrome citation


Rice Infecting Pseudomonas Genomes Are Highly Accessorized and Harbor Multiple Putative Virulence Mechanisms to Cause Sheath Brown Rot

PLoS One
PMCID: 4589537
PMID: 26422147
DOI: 10.1371/journal.pone.0139256

[…] ASH 2.0 [] website was used. In addition, selected genes were BLASTp against the Pseudomonas dataset with E-values less than 1e-20 and with a minimum identity of 20%. These were then visualized using CodaChrome 1.1 []. Whole-genome alignment was performed in two steps: first, we reordered contigs of Pfv-like and Pfv genomes against IRRI 6609 using MAUVE 2.3.1 [] under default parameters. Locally c […]

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CodaChrome institution(s)
Department of Molecular, Cellular and Developmental Biology, University of Colorado at Boulder, Boulder, CO, USA; BioFrontiers Institute, University of Colorado at Boulder, Boulder, CO, USA; Computational Biosciences Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA

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