codaln statistics

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Associated diseases

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codaln specifications

Information


Unique identifier OMICS_23854
Name codaln
Alternative name code2aln
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some nucleic acid sequence files.
Input format FASTA,GENBANK
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Versioning


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Maintainers


  • person_outline Peter F. Stadler <>
  • person_outline Ivo Hofacker <>
  • person_outline Roman Stocsits <>
  • person_outline Roman Stocsits <>
  • person_outline Claudia Fried <>

Publication for codaln

codaln in publication

PMCID: 1395342
PMID: 16483358
DOI: 10.1186/1471-2105-7-75

[…] under the gnu general public license) may be downloaded and used locally. to install the software locally, the publicly available packages emboss [] and r [] must also be installed. the programme codaln [] is recommended for aligning the input sequences. run-time and resource-use scale approximately linearly with the number of sequences and the length of the input alignment. on a pentium 4 […]


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codaln institution(s)
Interdisciplinary Centre for Bioinformatics, University of Leipzig, Leipzig, Germany; Institute for Theoretical Chemistry, University of Vienna, Wien, Austria; Bioinformatics Group, Department of Computer Science, University of Leipzig, Leipzig, Germany; Santa Fe Institute, Santa Fe, NM, USA
codaln funding source(s)
Supported by the Austrian Fonds zur Förderung der Wissenschaftlichen Forschung, Project Nos. P-13545-MAT and P-15893, and the German DFG Bioinformatics Initiative.

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