tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

Coding Potential Calculator CPC

Online

Distinguishes protein-coding from non-coding RNAs. CPC employs a discriminative model based on four sequence intrinsic features. The CPC model is species-neutral, making it useful for ever-growing non-model organism transcriptomes and even transcriptomes of organisms that are poorly annotated or lack genome assembly. The web server is mobile-friendly and more accessible on mobile devices such as the iPad.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible

0 user reviews

0 user reviews

No review has been posted.

CPC forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.

CPC classification

CPC specifications

Interface:
Web user interface
Input data:
RNA transcript sequences.
Output data:
Html view, raw data, and results details consisting of a summary paragraph, a graphical view of detail information in feature distribution of your sequence and more information of additional evidences for coding potential.
License:
GNU General Public License version 3.0
Version:
2
Maintained:
Yes
Restrictions to use:
None
Input format:
FASTA, BED, GTF
Programming languages:
Java
Computer skills:
Basic
Stability:
Beta

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible

0 user reviews

0 user reviews

No review has been posted.

CPC forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.

No open topic.

CPC versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.

No versioning.

CPC classification

CPC specifications

Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
2
Requirements:
Biopython package
Maintained:
Yes

CPC support

Maintainers

  • Liping Wei <>
  • Ge Gao <>
  • CPC Team <>
  • Liping Wei <>
  • Ge Gao <>
  • CPC Team <>

Additional information

http://cpc2.cbi.pku.edu.cn/help.php

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.

Publications

Institution(s)

State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing, China

Funding source(s)

Supported by National Key Research and Development Program [2016YFC0901603], China 863 Program [2015AA020108], State Key Laboratory of Protein and Plant Gene Research and National Program for Support of Top-notch Young Professionals (in part).

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.