CPC specifications

Unique identifier:
OMICS_05864
Alternative name:
CPC2
Restrictions to use:
None
Input format:
FASTA, BED, GTF
Programming languages:
Java
Computer skills:
Basic
Stability:
Beta
Name:
Coding Potential Calculator
Interface:
Web user interface
Input data:
RNA transcript sequences.
Output data:
Html view, raw data, and results details consisting of a summary paragraph, a graphical view of detail information in feature distribution of your sequence and more information of additional evidences for coding potential.
License:
GNU General Public License version 3.0
Version:
2
Maintained:
Yes

CPC specifications

Unique identifier:
OMICS_05864
Alternative name:
CPC2
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
2
Requirements:
Biopython package
Name:
Coding Potential Calculator
Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

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CPC distribution

download

CPC support

Maintainers

  • Liping Wei <>
  • Ge Gao <>
  • CPC Team <>
  • Liping Wei <>
  • Ge Gao <>
  • CPC Team <>

Additional information

http://cpc2.cbi.pku.edu.cn/help.php

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Publications

Institution(s)

State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing, China

Funding source(s)

Supported by National Key Research and Development Program [2016YFC0901603], China 863 Program [2015AA020108], State Key Laboratory of Protein and Plant Gene Research and National Program for Support of Top-notch Young Professionals (in part).

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