CoDNaS specifications

Information


Unique identifier OMICS_10744
Name CoDNaS
Alternative name Conformational Diversity of Native State
Restrictions to use None
Community driven No
Data access File download, Browse
Version 2.0
Maintained Yes

Documentation


Maintainer


  • person_outline Gustavo Parisi

Publications for Conformational Diversity of Native State

CoDNaS citations

 (2)
library_books

Pockets as structural descriptors of EGFR kinase conformations

2017
PLoS One
PMCID: 5724837
PMID: 29228029
DOI: 10.1371/journal.pone.0189147

[…] Three-dimensional coordinates of the EGFR kinase domain conformers were retrieved from CoDNAS (http://www.codnas.com.ar/ []) and PDB (http://www.pdb.org []). Multimeric crystals were split into individual chains, resulting in a total of 103 conformers with a crystal resolution less than […]

library_books

Addressing the Role of Conformational Diversity in Protein Structure Prediction

2016
PLoS One
PMCID: 4861349
PMID: 27159429
DOI: 10.1371/journal.pone.0154923

[…] January 2015 at http://depts.washington.edu/bakerpg/) and QUARK[]. Our analysis was limited to the subset of target proteins with observed conformational diversity as identified by cross-linking with CoDNaS database[,]. Initially, and from all available CoDNaS conformers of a protein, we only considered those structures with 100% sequence identity to the target and showing ligand changes, post-tra […]

CoDNaS institution(s)
Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Bernal, Argentina; Instituto de Ecología Genética y Evolución de Buenos Aires (IEGEBA)—Laboratorio de Genómica Médica y Evolución, Universidad Nacional de Buenos Aires, Argentina
CoDNaS funding source(s)
The Universidad Nacional de Quilmes (UNQ); the Argentinean National Research Council (CONICET)

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