CODOC statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left File compression chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

CODOC specifications

Information


Unique identifier OMICS_04175
Name CODOC
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input format BAM
Operating system Unix/Linux
Programming languages Java, R
Computer skills Advanced
Version 0.0.2
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Publication for CODOC

CODOC in publications

 (2)
PMCID: 4570706
PMID: 26371761
DOI: 10.1371/journal.ppat.1005160

[…] increase or decrease). we also extracted strand-specific, normalized depth-of-coverage signals (i.e., the counts of reads overlapping a particular genomic position) from the read alignments using codoc [] and converted them to the bigwig data format to enable manual inspection in a genome browser., we thank christian eggers for critical reading of the manuscript and jim driver for assistance […]

PMCID: 4459391
PMID: 25855803
DOI: 10.1093/hmg/ddv117

[…] variants were called with platypus version 0.5.2 () (www.well.ox.ac.uk/platypus) with default settings except for minflank = 0. coverage was calculated on deduplicated bam files using bedtools and codoc (). variant calling was performed across all five bam files simultaneously, producing a multi-sample vcf. the wes data from the family were extensively examined in ingenuity variant analysis […]


To access a full list of publications, you will need to upgrade to our premium service.

CODOC institution(s)
Center for Integrative Bioinformatics Vienna (CIBIV), Max F Perutz Laboratories, University of Vienna and Medical University of Vienna, Vienna, Austria
CODOC funding source(s)
Supported by the CIBIV household budget.

CODOC reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CODOC