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CoEv specifications

Information


Unique identifier OMICS_13063
Name CoEv
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Advanced
Version 1.1.2
Stability Stable
Requirements
Linear Algebra
Source code URL https://codeload.github.com/lindadib/CoevVersioning/zip/coev-1.1.2
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for CoEv

CoEv citations

 (2)
call_split

Selection on the Major Color Gene Melanocortin 1 Receptor Shaped the Evolution of the Melanocortin System Genes

2017
Int J Mol Sci
PMCID: 5751221
PMID: 29206201
DOI: 10.3390/ijms18122618
call_split See protocol

[…] We used the maximum likelihood implementation of the model Coev [] to estimate the nucleotide positions that were coevolving between pairs of genes. The analyses were based on the concatenated gene sequences and the species phylogenetic tree (). We measured t […]

library_books

Coev web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree

2015
BMC Bioinformatics
PMCID: 4657261
PMID: 26597459
DOI: 10.1186/s12859-015-0785-8

[…] ico nucleotide or amino acid data typically use Markov models to simulate each position independently, which is not appropriate in the case of coevolution [–].We previously developed the Markov model Coev that evaluates the score of coevolution of nucleotide positions using either Maximum Likelihood (ML) or Bayesian inference based on a substitution matrix of size 16×16 []. The model describes the […]


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CoEv institution(s)
Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland; Department of Plant and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
CoEv funding source(s)
This work was funded by the University of Lausanne, the Swiss National Science Foundation (grant 31003A-138282) and the Wenner-Gren Foundation.

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