COFECO statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Gene set enrichment analysis chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

COFECO specifications

Information


Unique identifier OMICS_08505
Name COFECO
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Gwan-Su Yi <>

Publication for COFECO

COFECO in publications

 (5)
PMCID: 4965726
PMID: 27490120
DOI: 10.1186/s12859-016-1079-5

[…] the pfam database []. ppi and ddi data were collected from integrated ppi database [] and integrated ddi database (iddi) [] respectively. moreover, we downloaded the protein complex datasets from cofeco []., from the uniprotkb, we first obtained totalhuman proteins in swissprot []. disease-associated genes were collected from three databases: omim, pharmgkb [], kegg disease []. […]

PMCID: 4460778
PMID: 26043779
DOI: 10.1186/1472-6947-15-S1-S7

[…] threshold for the first time, while maximizing the number of involved samples., to identify functional meaning of discovered coexpressed gene sets, we performed functional enrichment analysis by cofeco []. we selected the biological process of gene ontology terms with a corrected p-value of 0.005., we collected disease-associated genes from six databases: omim (online mendelian inheritance […]

PMCID: 3618247
PMID: 23566118
DOI: 10.1186/1472-6947-13-S1-S3

[…] (tf)-target functional modules and mirna-target functional modules from promoters and 3'-untranslated region (utr) motifs are collected from msigdb []. to collect protein complex functional modules, cofeco [], which contains data from reactome, corum [], gene ontology (go) [] cellular component category, pindb [], and mpact [] is selected. the go biological process category is also collected […]

PMCID: 3618306
PMID: 23496895
DOI: 10.1186/1471-2164-14-144

[…] biclusters, functional enrichment of extracted biclusters was conducted with the go functional category and the kegg biological pathway for each biclustering algorithm. a modified version of cofeco (composite function annotation enriched by protein complex data) was used for functional enrichment analysis []. all searched biclusters from each biclustering algorithm were enriched to four […]

PMCID: 2923113
PMID: 20653930
DOI: 10.1186/1752-0509-4-102

[…] types, see additional file ). we mapped every selected module over both mips and reactome domains to exploit more coverage (corum - http://mips.helmholtz-muenchen.de/genre/proj/corum[] and also cofeco - http://piech.kaist.ac.kr/cofeco[] were used)., finally, we looked at pathway enrichment through p-values (see additional file ) and performed a qualitative evaluation aimed to characterize […]


To access a full list of publications, you will need to upgrade to our premium service.

COFECO institution(s)
Department of Bio and Brain Engineering, KAIST, Gwahangno, Yuseong-gu, Daejeon, Korea

COFECO reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review COFECO