ColinearScan specifications
- Unique identifier:
- OMICS_11728
- Interface:
- Command line interface
- Input data:
- Genetic markers such as sequences
- Programming languages:
- C++, Perl
- Computer skills:
- Advanced
- Stability:
- Stable
- Maintained:
- Yes
- Software type:
- Package/Module
- Restrictions to use:
- None
- Operating system:
- Unix/Linux
- License:
- GNU General Public License version 2.0
- Version:
- 1.0.1
- Requirements:
- BioPerl, Getopt::Long, Pod::Usage
versioning
No versioning.
ColinearScan support
Maintainer
- ColinearScan <>
forum
No open topic.
Credits
Publications
-
(Wang et al., 2006)
Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice.
BMC Bioinformatics.
PMID: 17038171 DOI: 10.1186/1471-2105-7-447
Institution(s)
College of Life Sciences, National Laboratory of Plant Genetic Engineering and Protein Engineering, Center of Bioinformatics, Peking University, Beijing, China; College of Mathematics, Hebei Polytechnic University, Tangshan, Hebei, China; Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China; Beijing Genomics Institute, Chinese Academy of Sciences, Beijing, China
Funding source(s)
This study was supported by the National Key Basic Research Program of China (973 No 2003CB715900), Natural Science Foundation of China (NSFC, No 90408015 and 30170232) and the China High-tech Program, the China High Technology Platform and the Program of Introducing Talents of Discipline to Universities, no. B06001.
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