ColinearScan specifications
Information
| Unique identifier | OMICS_11728 |
|---|---|
| Name | ColinearScan |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | Genetic markers such as sequences |
| Operating system | Unix/Linux |
| Programming languages | C++, Perl |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Version | 1.0.1 |
| Stability | Stable |
| Requirements | BioPerl, Getopt::Long, Pod::Usage |
| Maintained | Yes |
Versioning
Add your version
Maintainer
- person_outline ColinearScan <>
ColinearScan article
library_books
Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice.
2006 BMC Bioinformatics
PMID: 17038171
DOI: 10.1186/1471-2105-7-447
ColinearScan citation
2016
PMCID: 5047885
[…] by running blastp among genes, we searched for potential anchors (e-value ≤ 1e-5; top five matches) between every possible pair of chromosomes within rice and pineapple, and between them. by running colinearscan (wang et al., 2006), we revealed homologous blocks within each genome and between different genomes (by setting maximal searching gap ≤ 50 genes and p-value < 0.05). by characterizing […]
ColinearScan institution(s)
College of Life Sciences, National Laboratory of Plant Genetic Engineering and Protein Engineering, Center of Bioinformatics, Peking University, Beijing, China; College of Mathematics, Hebei Polytechnic University, Tangshan, Hebei, China; Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China; Beijing Genomics Institute, Chinese Academy of Sciences, Beijing, China
ColinearScan funding source(s)
This study was supported by the National Key Basic Research Program of China (973 No 2003CB715900), Natural Science Foundation of China (NSFC, No 90408015 and 30170232) and the China High-tech Program, the China High Technology Platform and the Program of Introducing Talents of Discipline to Universities, no. B06001.
ColinearScan reviews
Be the first to review ColinearScan
