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Collection of Anti-Microbial Peptides CAMP

Online

A database of sequences, structures and family-specific signatures of prokaryotic and eukaryotic antimicrobial peptides (AMPs). Family-specific sequence signatures comprising of patterns and Hidden Markov Models were generated for 45 AMP families by analysing 1386 experimentally studied AMPs. These were further used to retrieve AMPs from online sequence databases. More than 4000 AMPs could be identified using these signatures. AMP family signatures provided in CAMPR3 can thus be used to accelerate and expand the discovery of AMPs. CAMPR3 presently holds 10247 sequences, 757 structures and 114 family-specific signatures of AMPs. Users can avail the sequence optimization algorithm for rational design of AMPs.

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CAMP classification

  • Eubacteria

CAMP specifications

Restrictions to use:
None
Data access:
Browse
Maintained:
Yes
Database management system:
MSSQL Server
Version:
3.0

Credits

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Publications

Institution(s)

Biomedical Informatics Centre of Indian Council of Medical Research, National Institute for Research in Reproductive Health, Mumbai, Maharashtra, India

Funding source(s)

This work [RA/296/09-2015] was supported by grants from Department of Science and Technology, Government of India [SB/S3/CE/028/2013] and Indian Council of Medical Research.

Link to literature

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