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Coloc specifications


Unique identifier OMICS_25609
Name Coloc
Alternative name Colocalization analysis
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 3.0.1
Stability Stable
Source code URL
Maintained Yes




No version available


Coloc citations


Immunogene therapy with fusogenic nanoparticles modulates macrophage response to Staphylococcus aureus

Nat Commun
PMCID: 5958120
PMID: 29773788
DOI: 10.1038/s41467-018-04390-7

[…] nt with DAPI (4',6-diamidino-2-phenylindole) (Life Technologies), dried and kept in the dark until examined by confocal microscopy (Zeiss LSM 710 NLO). PCC for colocalization was calculated using the Coloc2 plugin from ImageJ. At least ten representative images were analyzed to obtain the average coefficient.For TEM of cells, particles were introduced to the Raw 264.7 and J774a.1 cells under the s […]


A double helical motif in OCIAD2 is essential for its localization, interactions and STAT3 activation

Sci Rep
PMCID: 5943604
PMID: 29743632
DOI: 10.1038/s41598-018-25667-3
call_split See protocol

[…] age. Statistical data for the co-localization levels, co-localization coefficients for green and red channels, overlap coefficient (R), Pearson’s correlation coefficient (Rr) was generated using the “Coloc” option in the software. The number of co-localized pixels divided by the total number of green and red pixels was presented as the co-localization percentage. […]


Inhibitor of apoptosis proteins are required for effective fusion of autophagosomes with lysosomes

PMCID: 5943300
PMID: 29743550
DOI: 10.1038/s41419-018-0508-y
call_split See protocol

[…] ages were taken on a Keyence BZ9000 fluorescence microscope. Hoechst was added 30 min prior to imaging. Pearsons correlation coefficients were calculated using the FIJI distribution of ImageJ and the Coloc2 plugin. […]


A role for SOX9 in post transcriptional processes: insights from the amphibian oocyte

Sci Rep
PMCID: 5940923
PMID: 29740094
DOI: 10.1038/s41598-018-25356-1
call_split See protocol

[…] ages. Fluorescence density was quantified by measuring the average intensity of the GFP images inside masks previously built (Fig. ). Colocalization analyses were carried out using the ImageJ plugin “Coloc2”. […]


Compartmentalized Cyclic AMP Production by the Bordetella pertussis and Bacillus anthracis Adenylate Cyclase Toxins Differentially Affects the Immune Synapse in T Lymphocytes

Front Immunol
PMCID: 5938339
PMID: 29765373
DOI: 10.3389/fimmu.2018.00919
call_split See protocol

[…] scence intensity of the molecule at the IS area was divided by the intensity calculated for the entire cell and is expressed as relative recruitment index as previously described (). The quantitative colocalization analysis was performed on median optical sections using ImageJ and JACoP plug-in to determine Manders’ coefficient. […]


Frizzled 8 integrates Wnt 11 and transforming growth factor β signaling in prostate cancer

Nat Commun
PMCID: 5931552
PMID: 29717114
DOI: 10.1038/s41467-018-04042-w

[…] sualized using a confocal microscope (Leica TCS SP2) with a 63× oil immersion objective. For analysis of colocalization, 10 cells from two independent experiments were quantified using ImageJ and the Coloc 2 plug-in and Pearson’s correlation coefficient determined. […]


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