CoLoRMap specifications

Information


Unique identifier OMICS_12705
Name CoLoRMap
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Similar to most hybrid methods for error correction, CoLoRMap gets as input two sets of reads namely short reads and long reads from the same donor.
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements BWA, SAMtools, Minia
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Ehsan Haghshenas <>

CoLoRMap article

CoLoRMap institution(s)
School of Computing Sciences, Simon Fraser University, Burnaby, BC, Canada; MADD-Gen Graduate Program, Simon Fraser University, Burnaby, BC, Canada; Vancouver Prostate Centre, Vancouver, BC, Canada; School of Informatics and Computing, Indiana University, Bloomington, IN, USA; Department of Mathematics, Simon Fraser University, Burnaby, BC, Canada
CoLoRMap funding source(s)
NSERC CREATE fellowship (139277); an NSERC Discovery frontiers grant on ‘Cancer Genome Collaboratory’; an NSERC Discovery Grant (249834)

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